species:   Scscl
pid:       PID1627
parent:    Ssc-milR-103
paralog:   
locus:     NW_001820823.1:56180-56265
matures:   ['UGAGGUCUACUGAGGAUCGCAG', 'GUUUCAAAGAUGCUUCGAUA']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820823.1:56180-56265

3 out of bounds
4 alignments
3 proper strand
3 stranded perfect matches

   ************************                                *************************  
UAGUUUUUAACCCUUGUUUCAAAGAUGCUUCGAUAUCAUGUGUGACACAAGAUGUGAGGUCUACUGAGGAUCGCAGUGGUAGAGCU
.((((((..(((.(((((((..(((.(((((.(((((.((((...)))).)))))))))).).))..)))..)))).)))))))))
------------------------------------------------------UGAGGUCUACUGAGGAUCGCAG---------- l=22 a=0 c
---------------GUUUCAAAGAUGCUUCGAUA--------------------------------------------------- l=20 a=0 c*
-------------------------------------------------------------UACUGAGGAUCGCAGUGGUAGAG-- l=23 a=2 ma
-----UUUAACCCUUGUUUCAAAGAUG----------------------------------------------------------- l=22 a=0 ma*

-------------------------------------------------------------UACUGAGGAUCGCAGUGGUAGAG-- l=23 a=2 (ma)
------------------UCAAAGAUGCUUCGAUAUCAUGU--------------------------------------------- l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-111110101100
fn-101
